Survey of influenza A viruses circulating in wild birds in Canada 2005 to 2007.
Identifieur interne : 000617 ( Main/Exploration ); précédent : 000616; suivant : 000618Survey of influenza A viruses circulating in wild birds in Canada 2005 to 2007.
Auteurs : J. Pasick [Canada] ; Y. Berhane ; H. Kehler ; T. Hisanaga ; K. Handel ; J. Robinson ; D. Ojkic ; F. Kibenge ; M. Fortin ; R. King ; A. Hamel ; D. Spiro ; J. Parmley ; C. Soos ; E. Jenkins ; A. Breault ; D. Caswell ; C. Davies ; J. Rodrigue ; K. Mcaloney ; F. LeightonSource :
- Avian diseases [ 0005-2086 ] ; 2010.
Descripteurs français
- KwdFr :
- Animaux (MeSH), Animaux sauvages (MeSH), Canada (épidémiologie), Facteurs temps (MeSH), Grippe chez les oiseaux (virologie), Grippe chez les oiseaux (épidémiologie), Oiseaux (MeSH), Surveillance de la population (MeSH), Virus de la grippe A (classification), Virus de la grippe A (génétique), Virus de la grippe A (isolement et purification), Épidémies de maladies (médecine vétérinaire).
- MESH :
- génétique : Virus de la grippe A.
- isolement et purification : Virus de la grippe A.
- médecine vétérinaire : Épidémies de maladies.
- virologie : Grippe chez les oiseaux.
- épidémiologie : Canada, Grippe chez les oiseaux, Virus de la grippe A.
- Animaux, Animaux sauvages, Facteurs temps, Oiseaux, Surveillance de la population.
- Wicri :
- geographic : Canada.
English descriptors
- KwdEn :
- Animals (MeSH), Animals, Wild (MeSH), Birds (MeSH), Canada (epidemiology), Disease Outbreaks (veterinary), Influenza A virus (classification), Influenza A virus (genetics), Influenza A virus (isolation & purification), Influenza in Birds (epidemiology), Influenza in Birds (virology), Population Surveillance (MeSH), Time Factors (MeSH).
- MESH :
- geographic , epidemiology : Canada.
- classification : Influenza A virus.
- epidemiology : Influenza in Birds.
- genetics : Influenza A virus.
- isolation & purification : Influenza A virus.
- veterinary : Disease Outbreaks.
- virology : Influenza in Birds.
- Animals, Animals, Wild, Birds, Population Surveillance, Time Factors.
Abstract
A multi-agency, Canada-wide survey of influenza A viruses circulating in wild birds, coordinated by the Canadian Cooperative Wildlife Health Centre, was begun in the summer of 2005. Cloacal swab specimens collected from young-of-year ducks were screened for the presence of influenza A nucleic acids by quantitative, real-time reverse transcription-polymerase chain reaction (RRT-PCR). Specimens that produced positive results underwent further testing for H5 and H7 gene sequences and virus isolation. In addition to live bird sampling, dead bird surveillance based on RRT-PCR was also carried out in 2006 and 2007. The prevalence of influenza A viruses varied depending on species, region of the country, and the year of sampling, but generally ranged from 20% to 50%. All HA subtypes, with the exception of H14 and H15, and all NA subtypes were identified. The three most common HA subtypes were H3, H4, and H5, while N2, N6, and N8 were the three most common NA subtypes. H4N6, H3N2, and H3N8 were the three most common HA-NA combinations. The prevalence of H5 and H7 subtype viruses appears to have a cyclical nature.
DOI: 10.1637/8800-040109-Reg.1
PubMed: 20521675
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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<author><name sortKey="Davies, C" sort="Davies, C" uniqKey="Davies C" first="C" last="Davies">C. Davies</name>
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<author><name sortKey="Pasick, J" sort="Pasick, J" uniqKey="Pasick J" first="J" last="Pasick">J. Pasick</name>
<affiliation wicri:level="1"><nlm:affiliation>Canadian Food Inspection Agency, National Centre for Foreign Animal Disease, Winnipeg, Manitoba R3L 3M4, Canada. jpasick@inspection.gc.ca</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Canadian Food Inspection Agency, National Centre for Foreign Animal Disease, Winnipeg, Manitoba R3L 3M4</wicri:regionArea>
<wicri:noRegion>Manitoba R3L 3M4</wicri:noRegion>
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<author><name sortKey="Berhane, Y" sort="Berhane, Y" uniqKey="Berhane Y" first="Y" last="Berhane">Y. Berhane</name>
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<author><name sortKey="Kehler, H" sort="Kehler, H" uniqKey="Kehler H" first="H" last="Kehler">H. Kehler</name>
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<author><name sortKey="Hisanaga, T" sort="Hisanaga, T" uniqKey="Hisanaga T" first="T" last="Hisanaga">T. Hisanaga</name>
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<author><name sortKey="Kibenge, F" sort="Kibenge, F" uniqKey="Kibenge F" first="F" last="Kibenge">F. Kibenge</name>
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<author><name sortKey="Fortin, M" sort="Fortin, M" uniqKey="Fortin M" first="M" last="Fortin">M. Fortin</name>
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<author><name sortKey="King, R" sort="King, R" uniqKey="King R" first="R" last="King">R. King</name>
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<author><name sortKey="Hamel, A" sort="Hamel, A" uniqKey="Hamel A" first="A" last="Hamel">A. Hamel</name>
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<author><name sortKey="Breault, A" sort="Breault, A" uniqKey="Breault A" first="A" last="Breault">A. Breault</name>
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<author><name sortKey="Caswell, D" sort="Caswell, D" uniqKey="Caswell D" first="D" last="Caswell">D. Caswell</name>
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<author><name sortKey="Davies, C" sort="Davies, C" uniqKey="Davies C" first="C" last="Davies">C. Davies</name>
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<author><name sortKey="Rodrigue, J" sort="Rodrigue, J" uniqKey="Rodrigue J" first="J" last="Rodrigue">J. Rodrigue</name>
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<author><name sortKey="Mcaloney, K" sort="Mcaloney, K" uniqKey="Mcaloney K" first="K" last="Mcaloney">K. Mcaloney</name>
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<series><title level="j">Avian diseases</title>
<idno type="ISSN">0005-2086</idno>
<imprint><date when="2010" type="published">2010</date>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals (MeSH)</term>
<term>Animals, Wild (MeSH)</term>
<term>Birds (MeSH)</term>
<term>Canada (epidemiology)</term>
<term>Disease Outbreaks (veterinary)</term>
<term>Influenza A virus (classification)</term>
<term>Influenza A virus (genetics)</term>
<term>Influenza A virus (isolation & purification)</term>
<term>Influenza in Birds (epidemiology)</term>
<term>Influenza in Birds (virology)</term>
<term>Population Surveillance (MeSH)</term>
<term>Time Factors (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Animaux (MeSH)</term>
<term>Animaux sauvages (MeSH)</term>
<term>Canada (épidémiologie)</term>
<term>Facteurs temps (MeSH)</term>
<term>Grippe chez les oiseaux (virologie)</term>
<term>Grippe chez les oiseaux (épidémiologie)</term>
<term>Oiseaux (MeSH)</term>
<term>Surveillance de la population (MeSH)</term>
<term>Virus de la grippe A (classification)</term>
<term>Virus de la grippe A (génétique)</term>
<term>Virus de la grippe A (isolement et purification)</term>
<term>Épidémies de maladies (médecine vétérinaire)</term>
</keywords>
<keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>Canada</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Influenza A virus</term>
</keywords>
<keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Influenza in Birds</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza A virus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Virus de la grippe A</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Influenza A virus</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Virus de la grippe A</term>
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</keywords>
<keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Disease Outbreaks</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Grippe chez les oiseaux</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Influenza in Birds</term>
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<keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Canada</term>
<term>Grippe chez les oiseaux</term>
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<term>Population Surveillance</term>
<term>Time Factors</term>
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<keywords scheme="MESH" xml:lang="fr"><term>Animaux</term>
<term>Animaux sauvages</term>
<term>Facteurs temps</term>
<term>Oiseaux</term>
<term>Surveillance de la population</term>
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<front><div type="abstract" xml:lang="en">A multi-agency, Canada-wide survey of influenza A viruses circulating in wild birds, coordinated by the Canadian Cooperative Wildlife Health Centre, was begun in the summer of 2005. Cloacal swab specimens collected from young-of-year ducks were screened for the presence of influenza A nucleic acids by quantitative, real-time reverse transcription-polymerase chain reaction (RRT-PCR). Specimens that produced positive results underwent further testing for H5 and H7 gene sequences and virus isolation. In addition to live bird sampling, dead bird surveillance based on RRT-PCR was also carried out in 2006 and 2007. The prevalence of influenza A viruses varied depending on species, region of the country, and the year of sampling, but generally ranged from 20% to 50%. All HA subtypes, with the exception of H14 and H15, and all NA subtypes were identified. The three most common HA subtypes were H3, H4, and H5, while N2, N6, and N8 were the three most common NA subtypes. H4N6, H3N2, and H3N8 were the three most common HA-NA combinations. The prevalence of H5 and H7 subtype viruses appears to have a cyclical nature.</div>
</front>
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<DateCompleted><Year>2010</Year>
<Month>07</Month>
<Day>21</Day>
</DateCompleted>
<DateRevised><Year>2010</Year>
<Month>06</Month>
<Day>04</Day>
</DateRevised>
<Article PubModel="Print"><Journal><ISSN IssnType="Print">0005-2086</ISSN>
<JournalIssue CitedMedium="Print"><Volume>54</Volume>
<Issue>1 Suppl</Issue>
<PubDate><Year>2010</Year>
<Month>Mar</Month>
</PubDate>
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<Title>Avian diseases</Title>
<ISOAbbreviation>Avian Dis.</ISOAbbreviation>
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<ArticleTitle>Survey of influenza A viruses circulating in wild birds in Canada 2005 to 2007.</ArticleTitle>
<Pagination><MedlinePgn>440-5</MedlinePgn>
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<Abstract><AbstractText>A multi-agency, Canada-wide survey of influenza A viruses circulating in wild birds, coordinated by the Canadian Cooperative Wildlife Health Centre, was begun in the summer of 2005. Cloacal swab specimens collected from young-of-year ducks were screened for the presence of influenza A nucleic acids by quantitative, real-time reverse transcription-polymerase chain reaction (RRT-PCR). Specimens that produced positive results underwent further testing for H5 and H7 gene sequences and virus isolation. In addition to live bird sampling, dead bird surveillance based on RRT-PCR was also carried out in 2006 and 2007. The prevalence of influenza A viruses varied depending on species, region of the country, and the year of sampling, but generally ranged from 20% to 50%. All HA subtypes, with the exception of H14 and H15, and all NA subtypes were identified. The three most common HA subtypes were H3, H4, and H5, while N2, N6, and N8 were the three most common NA subtypes. H4N6, H3N2, and H3N8 were the three most common HA-NA combinations. The prevalence of H5 and H7 subtype viruses appears to have a cyclical nature.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Pasick</LastName>
<ForeName>J</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Canadian Food Inspection Agency, National Centre for Foreign Animal Disease, Winnipeg, Manitoba R3L 3M4, Canada. jpasick@inspection.gc.ca</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Berhane</LastName>
<ForeName>Y</ForeName>
<Initials>Y</Initials>
</Author>
<Author ValidYN="Y"><LastName>Kehler</LastName>
<ForeName>H</ForeName>
<Initials>H</Initials>
</Author>
<Author ValidYN="Y"><LastName>Hisanaga</LastName>
<ForeName>T</ForeName>
<Initials>T</Initials>
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<Author ValidYN="Y"><LastName>Handel</LastName>
<ForeName>K</ForeName>
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<Author ValidYN="Y"><LastName>Robinson</LastName>
<ForeName>J</ForeName>
<Initials>J</Initials>
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<Author ValidYN="Y"><LastName>Ojkic</LastName>
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<Initials>D</Initials>
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<Author ValidYN="Y"><LastName>Kibenge</LastName>
<ForeName>F</ForeName>
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<Author ValidYN="Y"><LastName>Fortin</LastName>
<ForeName>M</ForeName>
<Initials>M</Initials>
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<Author ValidYN="Y"><LastName>King</LastName>
<ForeName>R</ForeName>
<Initials>R</Initials>
</Author>
<Author ValidYN="Y"><LastName>Hamel</LastName>
<ForeName>A</ForeName>
<Initials>A</Initials>
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<Author ValidYN="Y"><LastName>Spiro</LastName>
<ForeName>D</ForeName>
<Initials>D</Initials>
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<Author ValidYN="Y"><LastName>Parmley</LastName>
<ForeName>J</ForeName>
<Initials>J</Initials>
</Author>
<Author ValidYN="Y"><LastName>Soos</LastName>
<ForeName>C</ForeName>
<Initials>C</Initials>
</Author>
<Author ValidYN="Y"><LastName>Jenkins</LastName>
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<ForeName>A</ForeName>
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</Author>
<Author ValidYN="Y"><LastName>Caswell</LastName>
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<Initials>D</Initials>
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<Author ValidYN="Y"><LastName>Davies</LastName>
<ForeName>C</ForeName>
<Initials>C</Initials>
</Author>
<Author ValidYN="Y"><LastName>Rodrigue</LastName>
<ForeName>J</ForeName>
<Initials>J</Initials>
</Author>
<Author ValidYN="Y"><LastName>McAloney</LastName>
<ForeName>K</ForeName>
<Initials>K</Initials>
</Author>
<Author ValidYN="Y"><LastName>Leighton</LastName>
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<MeshHeading><DescriptorName UI="D001717" MajorTopicYN="Y">Birds</DescriptorName>
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<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
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<QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName>
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<PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2010</Year>
<Month>6</Month>
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<tree><noCountry><name sortKey="Berhane, Y" sort="Berhane, Y" uniqKey="Berhane Y" first="Y" last="Berhane">Y. Berhane</name>
<name sortKey="Breault, A" sort="Breault, A" uniqKey="Breault A" first="A" last="Breault">A. Breault</name>
<name sortKey="Caswell, D" sort="Caswell, D" uniqKey="Caswell D" first="D" last="Caswell">D. Caswell</name>
<name sortKey="Davies, C" sort="Davies, C" uniqKey="Davies C" first="C" last="Davies">C. Davies</name>
<name sortKey="Fortin, M" sort="Fortin, M" uniqKey="Fortin M" first="M" last="Fortin">M. Fortin</name>
<name sortKey="Hamel, A" sort="Hamel, A" uniqKey="Hamel A" first="A" last="Hamel">A. Hamel</name>
<name sortKey="Handel, K" sort="Handel, K" uniqKey="Handel K" first="K" last="Handel">K. Handel</name>
<name sortKey="Hisanaga, T" sort="Hisanaga, T" uniqKey="Hisanaga T" first="T" last="Hisanaga">T. Hisanaga</name>
<name sortKey="Jenkins, E" sort="Jenkins, E" uniqKey="Jenkins E" first="E" last="Jenkins">E. Jenkins</name>
<name sortKey="Kehler, H" sort="Kehler, H" uniqKey="Kehler H" first="H" last="Kehler">H. Kehler</name>
<name sortKey="Kibenge, F" sort="Kibenge, F" uniqKey="Kibenge F" first="F" last="Kibenge">F. Kibenge</name>
<name sortKey="King, R" sort="King, R" uniqKey="King R" first="R" last="King">R. King</name>
<name sortKey="Leighton, F" sort="Leighton, F" uniqKey="Leighton F" first="F" last="Leighton">F. Leighton</name>
<name sortKey="Mcaloney, K" sort="Mcaloney, K" uniqKey="Mcaloney K" first="K" last="Mcaloney">K. Mcaloney</name>
<name sortKey="Ojkic, D" sort="Ojkic, D" uniqKey="Ojkic D" first="D" last="Ojkic">D. Ojkic</name>
<name sortKey="Parmley, J" sort="Parmley, J" uniqKey="Parmley J" first="J" last="Parmley">J. Parmley</name>
<name sortKey="Robinson, J" sort="Robinson, J" uniqKey="Robinson J" first="J" last="Robinson">J. Robinson</name>
<name sortKey="Rodrigue, J" sort="Rodrigue, J" uniqKey="Rodrigue J" first="J" last="Rodrigue">J. Rodrigue</name>
<name sortKey="Soos, C" sort="Soos, C" uniqKey="Soos C" first="C" last="Soos">C. Soos</name>
<name sortKey="Spiro, D" sort="Spiro, D" uniqKey="Spiro D" first="D" last="Spiro">D. Spiro</name>
</noCountry>
<country name="Canada"><noRegion><name sortKey="Pasick, J" sort="Pasick, J" uniqKey="Pasick J" first="J" last="Pasick">J. Pasick</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>
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